Actually the Minimig core doesn't have a flicker fixer - what it has is a scandoubler. A scandoubler stores each line of video, and outputs it at twice the speed, turning a 15.6KHz videomode into a 31.2KHz video mode. That's enough to make the PAL / NTSC video displayable by some PC monitors. However it doesn't remove the flicker in interlaced PAL / NTSC modes.
Removing interlace flicker requires buffering two entire frames of video, then merging them and outputting them as a single frame at twice the speed. While the SDRAM in the Chameleon is just about fast enough to pull off that feat, it's not fast enough to do much else at the same time, so it's not something that can realistically be integrated into a core.
Also, as Paul correctly points out, the 1084 can only handle 15KHz video modes, so even if the Chameleon had a flicker fixer, you wouldn't be able to use it with the 1084.
The Minimig core does support ECS/AGA Multiscan / DblPAL / DblNTSC modes, and also RTG modes, all of which can provide a flicker-free high res display - but again these aren't usable with the 1084.