Ok so just for reference, I made sure my scope was set up right and could see/trigger on data signals from a ps/2 keyboard (using the IBM model M (clikey), the textbook definition of ps/2). I then powered up the Lyra (using a nice HP power supply) with the keyboard connected (no Amiga), and probing the data and clock pins on the ps/2 keyboard connector, I get nothing on either clock or data pins. I then turned it off and made sure there was continuity from the plug to the appropriate pins, and there was. Seems either the chip or the resistor pack is pulling the ps/2 pins too high? I verified the resistor pack is 2.2k ohms. I tried 2 other real ps/2 keyboards and they all do the same.
On probing the outputs of the Lyra, both the data and clock pins seem to be pulsing a bit at about one pulse a second or so, which I think is normal? (I believe thats the handshake to the Amiga, going by the instructions).
Since the Amiga seems to have the same pinout as a normal IBM keyboard (I know the protocols are different), I plugged a keyboard directly into it, and had no problem seeing clock/data activity on the CIA. I actually got a screen to change on the Amiga test kit just pressing random keys, so I think the computer itself is likely good.
I think I got a dud Lyra