Anyway - I did somehow 'fluke' a view that looked pretty good on the monitor but some games just seemed to view too large for the screen resulting in losing a bit of the top (Alien breed 2), or the right (Ruff n Tumble).. Others had similar problems. Using the config tool I'm not sure how I would fix this as the 'adjust mode' is for the indi mode not the game mode? (or am I wrong here).. I couldn't find a way to adjust it and going into vga settings is not the same ability to move the screen around?
There isn't a "indi mode" as such (you can select what screen mode to use for adjusting or testing, but normally you want to test with the screenmode that was used to define a config slot).
On the right side in the config tool is a list of config "slots" with names (anything starting with PRE are preset defaults from the software). Most games run in either standard PAL or standard NTSC mode (640x256 or 640x200). So you will need to find the correct slot in the list and select it you can copy a pre mode if you want to change it. Then when you press the adjust button to change things and here you can move the image around. There can be multiple slots for PAL and you can disable or enable individual slots. The AGA mk3 will use the first "matching" slot when the game starts. This is matching is based on the number of scanlines. Copied slots are put at the top of the list, so if you modified a "preset" it will be selected for the game.
I don't have the keyboard connector on as I use a sub1200 keyboard adapter - I know with this on I can scale and move the screen around - but I believe it doesn't remember? what good is that?
The OSD will show the values which you can use in the config tool later. The idea is that the config tool should be able to retrieve the last value set that way as well after leaving the game (not sure if that works already version 1.4). But you can always write the values down it is only 4 of them.
Once it moaned it couldn't find the card and resulted in me painfully pulling my tower apart.
Also save or use will sometimes hang and results in a need to reboot.
Well at least you have a tower. My setup is just a bare 1200 mainboard I got from random box in Jens his basement. Listen, I understand the frustration, but the config tool isn't that buggy for me (and never was even during development). So there must be some library or component in your system that doesn't play nice with the config tool for some reason.
One part (although I'm guessing here) is that you are trying to change the VGA/monitor mode settings to shift the picture or have not selected the correct slot. As the normal adjust screen should not cause you to have to use the rescue disk, but messing with the VGA settings might.